Phenotype and GWAS Information:

Agronomic Traits

Note: All the agronomic trait is from the article Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection.

Metabolic Traits

Note: All the metabolic trait is from the article Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism. Some metabolics have two replications, the second replication is end with '_2', like 'mr1002_2'.

Search Results:

The detailed information about mr1327 can be find at here.

GWAS Results:

Note: If the P-value of Linear Regression (LR) or Linear Mixed Model (LMM) ≤ 1e-5 or the rank ≤ 20000, the results are saved. Only the LMM results are plotted below.

Significant Candidate Loci (Lead SNP):

Variation IDVariation ID V6ChromosomePositionLR P-value LMM P-value
vg0103370208 sf0103369208 1 3370208 5.74E-07 5.74E-07
vg0621432372 sf0621431375 6 21432372 8.73E-07 8.74E-07
vg0100449701 sf0100448701 1 449701 2.15E-06 2.15E-06
vg0103214478 sf0103213478 1 3214478 3.87E-06 3.87E-06
vg0907035204 sf0907034204 9 7035204 5.27E-06 5.27E-06